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研究一个基因的功能,最常规的方法便是过表达(over-expression)和静默(knock-down或者knock-out),一般是通过外源基因转染宿主,进而观察宿主相关的表型(Phenotype)发生的变化(凋亡、增殖、周期、侵袭、迁移、上下游信号通路、EMT等等)来判断基因的功能。
不管是过表达还是静默,细胞水平的研究往往是选择构建稳定细胞株,研究细胞发生的变化。常规的构建稳定细胞株的方法有真核质粒转染、慢病毒包装。慢病毒包装周期较长,费用较高,对实验室硬件条件要求高,极大地限制了他的应用;普通的真核质粒转染周期较长,目的基因整合随机,对宿主要求高等缺点也限制其应用。随着新技术的不断革新,针对真核质粒转染构建稳定细胞株的方法也不断的创新,出现TALEN、IOS、Cas9、Flp-In等技术,不断地提高稳定细胞株构建的成功率。
尤其是Flp-In系统,以其独特的优点,迅速被各大实验室采用,近些年累计发表的文献越来越多,得到广大科研工作者的认可。
Flp-In™ System总览:
Flp-In™完整系统(Flp-In™ Complete System)可使目的基因在哺乳动物细胞基因组的特定位点整合和表达。Flp-In系统(Flp-In System)涉及将Flp重组靶(FRT)位点导入所选哺乳动物细胞系的基因组中。然后通过Flp重组酶介导在FRT位点的DNA重组,将含有目的基因的表达载体整合到基因组中。
Flp-In™系统(Flp-In™ System)的主要组分包括:
1. Flp-In靶位点载体pFRT⁄lacZeo,用于制备含有FRT整合位点的宿主细胞系
2. 含有与潮霉素抗性基因相连的FRT位点的表达质粒,用于在Flp重组酶介导下,整合和筛选表达目的基因的稳定细胞系;目的基因的表达由人巨细胞病毒(CMV)即刻早期增强子⁄启动子调控
3. Flp重组酶表达质粒pOG44,用于在人CMV启动子调控下表达Flp重组酶
4. 含有氯霉素乙酰基转移酶(CAT)基因的对照表达质粒,在与pOG44共转染到Flp-In宿主细胞系中时表达CAT
Flp-In™ System的优点:
1. 一旦成功构建含FRT整合位点的Flp-In母细胞株,接下来构建表达目的基因稳定细胞株的工作就快速、高效;
2. Flp-In系统能构建同基因型的稳定细胞株;
3. Flp-In系统可以是多克隆稳定细胞株,无需纯化。
Flp-In™ System描述:
Flp-In系统依据酿酒酵母的DNA重组系统的特点,高效构建稳定哺乳动物表达细胞株。这种DNA重组系统应用重组酶(Flp)和定点重组技术(Craig, 1988; Sauer, 1994),将目的基因插入到哺乳动物指定的基因组中。
Flp-In系统运用3种不同的质粒来构建同基因型的稳定细胞株。
pFRT/lacZeo质粒是用来构建Flp-In母细胞株。质粒包含lacZ-Zeocin融合基因,有SV40早期启动子控制表达。FRT位点被插入在lacZ-Zeocin融合基因的ATG起始密码子下游。FRT位点是用来与Flp重组酶结合,进而被剪切。pFRT/lacZeo转染进细胞中,然后通过Zeocin抗生素筛选细胞,阳性克隆细胞即含单一的FRT整合位点。Flp-In母细胞株含FRT位点和表达lacZ-Zeocin融合基因。pFRT/lacZeo质粒整合进入基因组是随机的。
第二个主要的质粒是pcDNA5/FRT表达载体,用来将目的基因克隆进去,目的基因由hCMV启动子控制,载体还有Hygromycin抗体基因,还有5’编码区的FRT位点。Hygromycin抗性基因缺少启动子和ATG起始密码子。
第三个主要的质粒是pOG44载体,用来表达Flp重组酶(Broach et al., 1982; Broach and Hicks, 1980; Buchholz et al., 1996),由hCMV启动子控制。
pOG44质粒和含目的基因的pcDNA5/FRT质粒共转Flp-In母细胞株,Flp重组酶介导FRT位点的同源重组(母细胞基因组和pcDNA5/FRT),这样pcDNA5/FRT的目的基因插入基因组。同时将Hygromycin抗性基因插入到pFRT/lacZeo的SV40启动子和ATG起始密码子下,抑制了lacZ-Zeocin融合基因的表达。这样的话Flp-In稳定细胞株就可以通过hygromycin耐受、Zeoncin敏感、缺少ß-半乳糖苷酶活性、表达目的基因4个特性去筛选得到。
Flp-In™ System流程图:
下图描述了Flp-In系统的主要流程:
Flp重组酶介导DNA的重组:
在Flp-In系统中,Flp重组酶介导分子间的DNA重组,Flp重组酶介导的重组有如下特点:
1. 重组发生在特异的FRT位点;
2. 重组很保守,不需要DNA合成,FRT重组位点被保护,使重组位点发生突变的可能性降到最低;
3. 重组仅仅需要34bpFRT位点。
更多关于Flp重组酶和保守位点特异重组请参考文献(Craig, 1988; Sauer, 1994).
FRT位点:
FRT位点最初从酿酒酵母中分离得到,并被深入研究(Gronostajski and Sadowski, 1985; Jayaram, 1985; Sauer, 1994; Senecoff et al., 1985).最短的FRT位点包含34bp序列,包含2个13bp的片段序列,中间8bp序列含Xba I限制性酶切位点,另外13bp重复序列在大多数FRT位点中也有,但是并不是剪切所必须的(Andrews et al., 1985).当Flp重组酶结合到3段13bp的序列上时,剪切发生在中间的8bp区域(Andrews et al., 1985; Senecoff et al., 1985).
实验流程:
将pFRT/lacZeo质粒转染细胞,构建Flp-In母细胞株;
将目的基因克隆进pcDNA5/FRT表达载体;
在Flp-In母细胞中共转pcDNA5/FRT和pOG44质粒,构建出Flp-In表达细胞株;
检测目的基因的表达。
Flp-In™母细胞株构建:
BioVector NTCC Inc.从Invitrogen公司购得Flp-In™-293、Flp-In™-CV-1、Flp-In™-CHO、Flp-In™-BHK、Flp-In™-3T3、Flp-In™-Jurkat,节约客户的时间,同时也提供其他细胞上的的Flp-In母细胞株构建服务。
Cell Line | Source | Catalog no. |
Flp-In™-293 | Human embryonic kidney | NTCC600101 |
Flp-In™-CV-1 | African Green Monkey kidney | NTCC600102 |
Flp-In™-CHO | Chinese Hamster ovary | NTCC600103 |
Flp-In™-BHK | Baby hamster kidney | NTCC600104 |
Flp-In™-3T3 | Mouse (NIH Swiss) embryonic fibroblast | NTCC600105 |
Flp-In™-Jurkat | Human T-cell leukemia | NTCC600106 |
案例展示:
Figure 4 Cell migration and proliferation assay of TMEM16A variants.A, Representative images of wound healing in a scratch assay with inducible expression of TMEM16A variants in HEK293 cells cultured with (Tet+) or without (Tet?) tetracycline (0.1 μg/ml). Original magnification, 4x. (Scale bars: 5 μm). B, Quantification of the fraction of the wound that remains uncovered by the migratory cells as a function of time for cell treated with (Tet+) or without (Tet?). C, Cellular proliferation assay, BrdU staining of cells expressing TMEM16A variants (treated without or with tetracycline). Data represent the % of BrdU+ cells and are the mean ± SD of three independent experiments. | |
All the coding sequences for TMEM16A were cloned in the pcDNA5 FRT/TO plasmid. Stable expression of TMEM16A variants was achieved by Flp-recombinase-mediated recombination in HEK293 Flp-In cells followed by hygromycin B selection. Each TMEM16A-expressing vector that expresses the Flp-recombinase was cotransfected with Effectene transfection reagent and selected with a concentration of 200μg/ml hygromycin B. Individual clones were obtained by limited dilution. Induction of TMEM16A isoforms expression was achieved with 0.1μg/ml tetracycline . Cells were grown in DMEM-Glutamax-I media supplemented with 5% fetal bovine serum. | |
标题: | TMEM16A alternative splicing coordination in breast cancer |
杂志: | Molecular Cancer |
作者: | Ifeoma Ubby, Erica Bussani, Antonio Colonna, Giuseppe Stacul, Martina Locatelli, Paolo Scudieri, Luis Galietta and Franco Pagani |
Figure 3. Inducible expression of hSLCO5A1 in HeLa cells. Protein expression of the YFP-tagged WT SLCO5A1 or its L33F mutant after induction with 1 mg/ml tetracycline for 24 h was analyzed by confocal fluorescence microscopy (blue: DAPI; yellow: YFP). The diagrams represent YFP fluorescence intensities along the length of the red arrows (x-axis: distance [μm]; y-axis: relative signal intensity). | |
Flp-In T-REx-HeLa cells allow the tetracycline-inducible expression of a gene of interest from a specific genomic location. Stable SLCO5A1-expressing Flp-In TREx-HeLa cells were generated using the FlpIn recombinasemediated system kit, which permits the targeted integration of genes to the same locus in all transfected cells to provide a homogeneous level of gene expression. To this end, cells were co-transfected with the FlpIn expression vector pcDNA5/FRT/TO (mock) or with the same vector containing the wild-type (WT) or mutant (L33F) sequence for SLCO5A1, modified C-terminally with either the sequence for a HA epitope or a YFP-tag or left unmodified, together with the Flp-recombinase expression vector pOG44. Individual clones were separated by monoclonal selection with 15 mg/ml blasticidin and 100 mg/ml hygromycinB. Cells were cultured in EMEM supplemented with 10% FCS (tetracycline/doxycycline-reduced). SLCO5A1-expression was induced by adding 1 mg/ml tetracycline (tet) to the Flp-In TREx-HeLa cells (hereinafter referred to as HeLa cells). | |
标题: | Characterization of SLCO5A1/OATP5A1, a Solute Carrier Transport Protein with Non-Classical Function |
杂志: | PLOS ONE |
作者: | Katrin Sebastian, Silvia Detro-Dassen, Natalie Rinis, Dirk Fahrenkamp, Gerhard Mu¨ller-Newen, Hans F. Merk, Gu¨ nther Schmalzing, Gabriele Zwadlo-Klarwasser, Jens Malte Baron |
Fig.1. PEX14–TEV–Protein A localizes to peroxisomes and is functional. Validation of the peroxisomal localization of the Protein-A-tagged genomic copy of PEX14. Cell lines Flp-In-293 cells and Flp-In-293 [PEX14–TEV– Protein A] were transiently transfected with a plasmid encoding the peroxisomal marker EGFP–PTS1. Specific immunodetection of the fusion protein PEX14–TEV–Protein A was carried out with anti-Protein A antibodies, the endogenous and the fusion protein were detected by using antibodies against PEX14. Scale bars:10 um. | |
Generation and selection of stable cell lines expressing PEX14–TEV–ProteinA | |
标题: | PEX14 is required for microtubule-based peroxisome motility in human cells |
杂志: | Journal of Cell Science |
作者: | Pratima Bharti, Wolfgang Schliebs, Tanja Schievelbusch, Alexander Neuhaus, Christine David, Klaus Kock, Christian Herrmann, Helmut E. Meyer, Sebastian Wiese, Bettina Warscheid, Carsten Theissand Ralf Erdmann |
Figure 3. Confocal microscopy analysis and cell surface expression of Flp-In™-293 cells stablyexpressing wild-type and mutant BCRP. A) The cellular localization of wild-type and mutant BCRP in Flp-In™-293 cells (shown ingreen) was determined by immunofluorescent confocal microscopy using the BCRP-specific mAb BXP-21. Cell nuclei were stained with DAPI and are shown in red. B) Expression of wild-type and mutant BCRP on cell surface of stably transfected Flp-In™-293 cells was detected using the 5D3 monoclonal antibody. Representative flow cytometry histograms | |
Generation of Flp-In™-293 cells stably expressing wild-type BCRP and proline mutants | |
标题: | Identification of Proline Residues In or Near the Transmembrane Helices of the Human Breast Cancer Resistance Protein (BCRP/ABCG2) Important for Transport Activity and Substrate Specificity |
杂志: | Biochemistry |
作者: | Zhanglin Ni, Zsolt Bikadi, Diana L. Shuster, Chunsheng Zhao, Mark F. Rosenberg, and Qingcheng Mao |
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