pEcCpf1 BioVector® RNA引导的核酸内切酶基因编辑质粒 BioVector NTCC质粒载体菌株细胞蛋白抗体基因保藏中心

pEcCpf1 BioVector® RNA引导的核酸内切酶基因编辑质粒

BioVector NTCC质粒载体菌株细胞蛋白抗体基因保藏中心

The pEcCpf1 plasmid refers to a specific vector that is used in genetic research, particularly in the context of gene editing. This plasmid is associated with Cpf1, an enzyme from the Type V CRISPR-Cas system, also known as Cpf1 (Crispr from Prevotella and Francisella 1).

Key Features of pEcCpf1:

1. Cpf1 Enzyme:

   • Cpf1 (also known as Cas12a) is an RNA-guided endonuclease that is used in CRISPR genome editing technologies.

   • Unlike the more widely known SpCas9, Cpf1 recognizes a different protospacer adjacent motif (PAM) sequence (5'-TTN-3') and has distinct features. It generates sticky ends (overhangs) after cutting the target DNA, which can be advantageous for certain types of gene editing or homologous recombination applications.

2. Plasmid Characteristics:

   • pEcCpf1 contains the Cpf1 gene (from Escherichia coli) and is designed to be used in mammalian cells for gene editing purposes. It can be used in various organisms, including bacterial, yeast, or mammalian cell cultures.

   • This plasmid can be used to express the Cpf1 endonuclease in cells, allowing researchers to induce site-specific double-strand breaks at target DNA sequences. After the break, the cell attempts to repair the DNA, providing a mechanism for inserting, deleting, or modifying genes.

3. CRISPR/Cas System Usage:

   • The Cpf1-based CRISPR/Cas system is often preferred in situations where sticky ends (instead of blunt ends, as generated by Cas9) are more useful for DNA repair, especially in homology-directed repair (HDR) strategies, where the cell's repair machinery uses a template DNA to correct or introduce mutations.

   • It can be utilized for genomic targeting, gene knockout, gene activation or repression, and genetic modification.

4. Advantages of Cpf1 Over Cas9:

   • Cpf1 has a simpler PAM sequence (TTN, where N is any nucleotide), which may allow for targeting regions that Cas9 cannot efficiently recognize.

   • Cpf1 also has the advantage of producing sticky ends after DNA cleavage, which can facilitate the integration of donor DNA during homology-directed repair (HDR).

   • Cpf1 requires only a single-guide RNA (sgRNA), while Cas9 needs a separate trans-activating CRISPR RNA (tracrRNA) to guide the enzyme, making the Cpf1 system somewhat more straightforward for use in certain genetic engineering tasks.

5. Applications:

   • Gene Editing: The pEcCpf1 plasmid is used in CRISPR experiments to precisely alter genes in various organisms. This system has applications in functional genomics, genetic engineering, and therapeutic gene editing.

   • Targeted Mutagenesis: It is used for creating targeted mutations in the genome, such as insertions, deletions, or point mutations.

   • Gene Activation/Repression: Researchers can modify Cpf1 to act as a gene activator or repressor by fusing it with activator or repressor domains.

6. Plasmid Structure:

   • The pEcCpf1 plasmid typically includes:

     • A Cpf1 gene driven by a promoter for expression in the target cells.

     • A sgRNA scaffold to guide Cpf1 to the specific target sequence.

     • A selection marker (e.g., antibiotic resistance gene) for selecting cells that have successfully taken up the plasmid.

     
     

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