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DescriptionBack to Top
pCLIPf Vector is a mammalian expression plasmid intended for the cloning and stable or transient expression of CLIP-tag® protein fusions in mammalian cells. This plasmid encodes CLIPf, a CLIP-tag protein, which is expressed under control of the CMV promoter. The expression vector has an IRES (internal ribosome entry site) and a neomycin resistance gene downstream of the CLIPf for the efficient selection of stable transfectants. pCLIPf Vector contains two multiple cloning sites to allow cloning of the fusion partner as a fusion to the N- or C-terminus of the CLIPf.
The CLIP-tag is a novel tool for protein research, allowing the specific, covalent attachment of virtually any molecule to a protein of interest. The CLIP-tag is a small protein based on human O6-alkylguanine-DNA-alkyltransferase (hAGT). CLIP-tag substrates are derivatives of benzylcytosine (BC). In the labeling reaction, the substituted benzyl group of the substrate is covalently attached to the reactive cysteine of CLIP-tag forming a stable thioether link.
pCLIPf contains an improved version of CLIP-tag, termed CLIPf. CLIPf displays faster kinetics in in vitrolabeling and fast, specific and efficient labeling in live and fixed cell applications, thereby rendering it a desired research tool for analysis of protein dynamics.
Although CLIP-tag is based on the same protein as SNAP-tag®, the benzylcytosine substrates form a separate class of substrates, different from the benzylguanine substrates recognized by SNAP-tag. CLIP-tag and SNAP-tag can be used for orthogonal simultaneous labeling.
There are two steps to using this system: sub cloning and expression of the protein of interest as a CLIPf fusion, and labeling of the fusion with the CLIP-tag substrate of choice. Cloning and expression of CLIPf fusion proteins are described in this document. The labeling of the fusion proteins with CLIP-tag substrates is described in the instructions supplied with the CLIP-tag substrates.


Cloning Region of pCLIPf: Unique restriction sites in the regions flanking the CLIPfgene are displayed above the coding strand. The complete sequence for pCLIPf and the control plasmids can be downloaded here .
DNASU is a central repository for plasmid clones and collections that may also be helpful.
Advantages and FeaturesBack to Top
Features
BACKGROUND:
A plasmid map and the sequence of the cloning region can be found in this document. The complete plasmid sequence can be downloaded. This plasmid encodes the gene CLIPf which is a mutant form of the human gene for O6-alkylguanine-DNA-alkyltransferase (hAGT). The codon usage of the gene is optimized for expression in mammalian cells. In the plasmid sequence, the CLIPf gene is encoded from 969 bp to 1514 bp.
This plasmid is intended for the cloning and stable or transient expression of CLIP-tag protein fusions in mammalian cells. It is suitable for the efficient production of stable cell lines expressing CLIPf gene fusions. The plasmid contains the CMV promoter followed by the genes for CLIPf and neomycin resistance separated by the IRES of the encephalomyocarditis virus (ECMV), which permits the translation of two open reading frames from one messenger RNA; therefore after selection of stable mammalian cells for neomycin resistance, nearly all surviving colonies should stably express the CLIPffusion protein. Unless the expression experiments require a pure population of cells, the pool of resistant cells can simply be used, otherwise cell clones can be isolated and characterized using standard procedures.
The plasmid contains the β-lactamase (Ampicillin resistance) gene for maintenance in bacteria. The gene of interest can be cloned upstream or downstream of the CLIPf coding sequence, as a fusion to the N- or C-terminus of the CLIP-tag. pCLIPf Vector can also be used as an expression control plasmid, expressing CLIPf alone, in which case the CLIP-tag protein is distributed throughout the cell. The CLIPf gene can be isolated from the plasmid using PCR or direct cloning in order to subclone it into a different vector of choice.
Properties and UsageBack to Top
Materials Required but not Supplied
- Tissue culture reagents and media
- Mammalian cell line(s)
- Transfection reagents
- CLIP-tag substrates
Storage Temperature
-20°C
Vectors:pACT
pBIND
Contorl plasmids:pACT-MyoD
pBIND-Id
Reporter plasmid:pG5luc
Stratagene
Vectors:pCMV-BD
pCMV-AD
Contorl plasmids:pBD-p53
pBD-NFκB
pAD-SV40T
pAD-TRAF
Reporter plasmid:pFR-luc
酵母双杂交系统
Clontech
Vectors:pGBKT7
pGADT7
Positivecontorls:pCL1
pGBKT7-53
pGADT7-T
Negativecontrol:pGBKT7-Lam
Strain:AH109
Vector:pACT2 AD
Stratagene
Vectors:pSos
pMyr
Control plasmid:pSos MAFB
Strain:
酵母单杂交系统
Clontech
Vector:pHis2
酵母三杂交系统
Clontech
Vector:pBridge
Strains:Y2H Gold Yeast strain
Y187
诱导系统:
蜕皮激素诱导表达系统
Invitrogen
Vectors:pIND
pVgRxR
LacSwith II哺乳动物诱导表达系统
Stratagene
Vectors:pOPRSVI
pOPI3CAT
pCMVLacI
GeneSwith哺乳动物诱导系统
Invitrogen
Vectors:pSwitch
pGenev5-His B
四环素诱导系统
Invitrogen
Vectors:pcDNA4/TO/Myc-HisA
pcDNA4/TO/Myc-His B
pcDNA4/TO/Myc-HisC
Contorl plasmid:pcDNA4/TO/Myc-His/LacZ
Regulatory plasmid:pcDNA6/TR
Clontech
Vectors:pTet-On
pTet-Off
pTRE2
pTRE2 hygro
pTRE2pur
pTK-hyg
pRevTet-On
pRevTet-Off
pRevTRE
pTet on advanced
pTRETight
pTRE Tight Luciferase
pCMV-Tet3G
pTRE3G
pTRE3G-Luc
TaleToolBox kit(TALEN and TALETF)
Vectors:pNI v2
pNG v2
pNN v2
pHD v2
pTALETFv2 (NN)
pTALETF v2 (NG)
pTALETF v2 (NI)
pTALETF v2 (HD)
pTALENv2 (NI)
pTALEN v2 (NG)
pTALEN v2 (NN)
pTALEN v2 (HD)
CRISPR/Cas系统
Vectors:pX334
蛋白体内分析系统
NEB
Vectors:pCLIP f
pCLIPf -NK1R
腺病毒系统:
Stratagene
Vectors:pShuttle-CMV
pShuttle
pShuttle-IRES-hrGFP2
pAdTrack-CMV
pAdTrack
pAdEasy-1
Strains:BJ5183
AdEasy-1
Invitrogen
Vector:pAd/BLOCK-iT-DEST RNAi Gateway Vector
Vectors:pDC315
pBHGloxdelE13cre
Cellbiolabs
Vectors:pacAd5 CMV
pacAd5 9.2-100
pacAd5CMV-GFP
腺相关病毒系统:
Vectors:pAAV-MCS
pAAV-RC
pHelper
pAAV-LacZ
pAAV-IRES-hrGFP
pCMV-MCS
逆病毒系统:
RNAi
Clontech
Vectors:RNAi-Ready pSIREN-RetroQ
RNAi-Ready pSIREN-RetroQ-DsRed-Express
RNAi-ReadypSIREN-RetroQ-ZsGreen
Vectors:pSilencer5.1-U6-Retro
pSilencer5.1-H1-Retro
基因表达载体
Vectors:pRetroX-IRES-ZsGreen1
pLNCX2
pQCXIH
pMSCV puro
pMSCV neo
pRetroX-IRES-DsRed Express
Vectors:pBabe puro
pSuper retro puro
pSuper retro GFP-neo
逆病毒包装载体
Vectors:pCMV-Gag-pol
pCMV-VSV-G
Vectors:pCL Ampho
Vectors:pVPack-GP
pCMV VSV G
Vectors:pMXs-hOct4
pMXs-hSox2
pMXs-hKlf4
pMXs-hC-Myc
慢病毒系统:
RNAi载体
Vectors:pSicoR
pSicoRpGK puro
pLentilox 3.7
pLKO.1puro
pLKO.3G
pPRIME-TET-GFP-FF3
pPRIME-TREX-GFP-FF3
pLVTH
pLVTHM
Vectors:pLVX-shRNA1
pLVX-shRNA2
Vectors:pSIH1-H1-CoGFP
Vectors:pLKO-puro TurboGFP
OpenBiosystems
Vectors:pGIPZ empty
pTRIPZempty
基因表达载体
Vectors:pLVX-DsRed-Monomer-N1
pLVX-AcGFP1-N1
pLVX-AcGFP1-C1
pLVX-IRES-ZsGreen1
pLVX-IRES-td Tomato
pLVX-IRES-mCherry
pLVX-IRES-neo
pLVX-IRES-puro
pLVX-puro
pLVX-Tight-Puro
pLVX-Tet-On-Advanced
pLVX-TRE3G
pLVX-Tet3G
pLVX-EF1a-IRES puro
Invitrogen
Vectors:pLenti4 TO/V5 DEST
pLenti6V5 DEST
pLenti6-UbC-V5-DEST
Vectors:pCDH-CMV-MCS-EF1-copGFP
pCDH-CMV-MCS-EF1-GFP+Puro
pCDH-CMV-MCS-EF1-puro
pCDH-EF1-MCS-T2A-Puro
pCDH-MCS-T2A-Puro-MSCV
Vectors:pWPXL
FUGW
慢病毒包装载体
Invitrogen
Vectors:pLp1
pLp2
pLpVSV G
Strains:Stbl3
Stbl4
Cellbiolabs
Vector:pCgpV
Clontech
Vector:pVSV G
Addgene
Second generation:
Vectors:pCMV-dR8.91
pCMV-VSV-G
Second generation:
Vectors:pMD2.G
pSPAX2
Third generation:
Vectors:pMDLg pRRE
pRSV-rev
pCMV-VSV-G
iPS慢病毒载体
Vectors:pLentG-KOSM
Vectors:FUW-M2rtTA
TetO-FUW-OSKM
Vectors:FUW-tetO-hOCT4
FUW-tetO-hSOX2
FUW-tetO-hKLF4
FUW-tetO-hMYC
FUW-M2rtTA
Vector:LeGO-iC2
Vector:pLOX-CW-CRE
建永生化细胞系慢病毒载体
Vectors:pLOX-CWBmi1
pLOX-TERT-iresTK
pLOX-Ttag-iresTK
PiggyBac转座子系统
SBI
Vectors:PiggyBac Dualpromoter (PB513B-1)
Super PiggyBac Transposase (PB200PA-1)
信号通路报告系统:
Clontech
Vectors:pGAS-TA-Luc
pSTAT3-TA-Luc
pISRE-TA-Luc
pTA-Luc
pIκB-EGFP
pNFAT-TA-Luc
pCaspase3-sensor
pAP1(PMA)-TA-Luc
pCRE-Luc
pGRE-Luc
pHSE-Luc
pE2F-TA-Luc
Stratagene
Vectors:p53-Luc
pAP-1-Luc
pNF-κB-Luc
pSRE-Luc
Vectors:pGL4.10
pGL4.13
pGL4.17
pGL4.19
pGL4.26
pGL4.27
pGL4.29
pGL4.30
pGL4.75
pGL4.79
Millipore
Vectors:TOPFlash
FOPFlash
Vector:SuperTopFlash
RNAi系统:
Vectors:pSilencer1.0
pSilencer 2.1-U6 hygro
pSilencer 3.1-H1 hygro
pSilencer 3.1-H1neo
pSilencer 4.1-CMV neo
pSilencer 4.1-CMV puro
Reporter plasmid:pMIR-REPORT Luciferase
Promega
Reproter plasmids:psiCHECK-2
pmir GLO
Clontech
Vector:pmR mCherry
SBI
Vector:pmiRZipanti-microRNA
Genscript
Vectors:pRNATin-H1.2/Neo
pRNATin-H1.2/Hygro
pRNATin-H1.2/Retro
pRNA-H1.1/Adeno
Clontech
Vector:pSingle-tTS-shRNA
酵母表达系统:
酿酒酵母
Invitrogen
Vectors:pYES2
pYES6/CT
pYES2/CT/α-factor
Strain:INVSc1
毕赤酵母
Invitrogen
Vectors:pGAPZαA
pGAPZαB
pGAPZαC
pPICZαA
pPICZαB
pPICZαC
pPIC9K
pPIC3.5K
pPICZ A
pPICZ B
pPICZ C
Strains:X33
KM71
KM71H
GS115
SMD1163
SMD1168
Invitrogen
Vectors:pPink HC
pPinkLC
Strains:Pichiapink-1
Pichiapink-4
LifeSensors
Vectors:pP-αSUMO3
pE-SUMO
SUMO protease 2(gene)
Gateway系统:
Invitrogen
Vectors:pENTR 1A
pENTR3C
pDONR221
pcDNA6.2-GWEmGFP-miRnegative
pDONR Zeo
Regulatory plasmid:pLenti6/TR
Strain:DB3.1
表面展示系统:
酵母表面展示
Invitrogen
Vector:pYD1
Strain:EBY100
哺乳动物表面展示
Invitrogen
Vector:pDisplay
噬菌体表面展示
Vector:pCantab 5e
Strains:HB2151
TG1
重组蛋白乳汁表达系统:
Invitrogen
Vector:pBC1
绝缘子检测系统:
Invivogen
Vector:pWHERE
果蝇细胞表达系统:
Invitrogen
Vectors:pAc5.1 V5-His B
pCo hygro
哺乳动物表达系统:
Invitrogen
Vectors:pcDNA3.1(neo)+
pcDNA3.1(neo)-
pcDNA3.1(hyg)+
pcDNA3.1(zeo)+
pcDNA3.1/GS
pcDNA3.1(-)/myc-His A
pcDNA4/HisMax B
pcDNA6-Myc/His B
pSecTag2 A
pVAX1
pBudCE4.1
pTracerCMV2
pCEP4
pUB6/V5 His A
pUB6/V5His B
pUB6/V5 His C
pUB6/V5 His lacZ
pSFV1
pEF1/myc-HisB
pcDNA3.1(+)/Myc HisB
pEF6/Myc-HisC
pEF4/V5 HisA
pcDNA4/V5-His A
Stratagen
Vectors:pCMV-Tag 2B
pCMV-Tag 5B
pNTAP-B
pBK-CMV
pIRES-hrGFP-1a
pSG5
Promega
Vectors:pCI-neo
pCI
pSI
Clontech
Vectors:pCMV-myc
pCMV-HA
pIRES
pIRES neo
pIRES hyg3
pIRES neo3
pIRES puro3
pIRES2-EGFP
pIRES puro2
pBI CMV1
Sigma
Vectors:pFLAG CMV2
Invivogen
Vectors:pVitro2-neo-mcs
Addgene
Vectors:pCAGGS
昆虫细胞表达系统:
Invitrogen
Vectors:pFastBac1
pFastBac1-Gus
pFastBacHT A
pFastBacHT B
pFastBacHT C
pFastBacHT-CAT
pFastBacDual
pBlueBacHis2 A
pBlueBacHis2 B
pBlueBacHis2 C
pVL1392
pVL1393
pDEST 10
Strain:DH10Bac
Vectors:pIZT/V5-His
pMIB v5-His B
MultiBac Expression System
Vectors:pFBDM
pUCDM
pBADZ-His6Cre
Strains:DH10MultiBac
BW23473
Novagen
Vectors:pIEX-Bac1
荧光蛋白报告系统:
Clontech
Vectors:pDsRed2-N1
pDsRed2-C1
pDsRED-Monomer-N1
pmCherry-N1
pmCherry-C1, pEYFP-N1
pEYFP-C1
pEGFP-N1
pEGFP-C1
pEGFP-N3
pEGFP-1
pAcGFP1-1
pECFP-N1
pECFP-C1
pDsRED2-ER
pDsRED2-Mito
pDsRED2-Nuc
pDsRED2-Peroxi
pEYFP-Golgi
pEYFP-Mem
pEYFP-ER
pEYFP actin
pEYFP tub
pEGFP-Actin
pECFP-ER
pECFP-Mito
pLEGFP-N1
pLEGFP-C1
pDsRed2-1
pEGFP-C3
pPAmCherry-Tubulin
pZsYellow-N1
pAmCyan-N1
pDsRed-Monomer
pEBFP-N1
pEBFP-C1
pmRaspberry
pIRES2-DsRedexpress
FRET assay
Vectors:Dkeima fluorescent protein
mAmetrine
启动子增强子报告系统:
Promega
Vectors:pGL3-basic
pGL3-control
pGL3-enhancer
pGL3-promoter
pRL-TK
pRL-CMV
pRL-SV40
NEB
Vectors:pGluc-basic
原核表达系统:
Novagen
Vectors:pET-11a(+)
pET15b(+)
pET-17b(+)
pET-19b(+)
pET-20b(+)
pET-21a(+)
pET-22b(+)
pET-26b(+)
pET-27b(+)
pET-28a(+)
pET-28b(+)
pET-29a(+)
pET-30a(+)
pET31b(+)
pET-32a(+)
pET-39b(+)
pET-40b(+)
pET41a
pET42a(+)
pET43.1a
pET48b(+)
pET49b(+)
pET50b(+)
pET52b(+)
pETduet-1
pACYCDuet-1
pRSFDuet-1
pCDFDuet-1
pCOLA duet-1
Strains:BL21
BL21(DE3)
BL21(DE3)plysS
Rosetta(DE3)
Rosetta-gami 2(DE3)pLysS
Rosetta-gamiB(DE3)pLysS
BLR(DE3)
RosettaBlue(DE3)
Rosetta(DE3)plysS
Rosetta-gami(DE3)
Origami(DE3)
OrigamiB(DE3)
Tuner(DE3)
Takara
Vectors:pCold I
pCold II
pCold III
pCold TF
NEB
Vectors:pMAL-c2x
pMAL-c4x
pMAL-p4x
Biosee
Vectors:pLLP-OmpA
pLLP-STII
pMBP-P
pMBP-C
pET-GST
pET-Trx
pET-His
pTrc-CKS
pET-DsbA
Stratagene
Strain:BL21 codonplus(DE3)RIPL
BL21gold(DE3)
BL21gold(DE3) plysS
ArcticExpress(DE3)RP
Invitrogen
Vector:pRSET A
Strain:BL21(AI)
Qiagen
Vector:pQE30
pQE32
Strain:M15
NEB
Vectors:pTWIN1
pTYB11
pMXB10
pTXB1
Strain:ER2566
Amersham
Vectors:pGEX-4T-1
pGEX-5X-2
pGEX-6P-1
pGEX-2TK
Invitrogen
Vectors:pBADHisA
pBADHis B
pBADHisC
Vector:pEcoli-6xHN-GFPuv
Lucigen
Strain:C41(DE3)
C43(DE3)
Other
Vectors:pBV220
pBluescript II SK(+)
pBluescript II KS(+)
Takara
分子伴侣系统
Vectors:pG-KJE8
pGro7
pKJE7
pG-Tf2
pTf16
乳酸菌表达系统
Vector:pMG36e
Strain:MG1363
基因载体:
Invitrogen
Vector:pOG44
Invivogen
Vectors:pORF-lacZ
pORF-HSV1tk
克隆载体:
Promega
Vectors:pUC18
pUC19
pBR322
pSP64
pSP73
NEB
pACYC184
柯斯载体:
Stratagene
Vector:SuperCos1
同源重组载体:
Vectors:pSIM5
pSIM6
细菌基因敲除系统:
Vectors:pKD3
pKD4
pKD20
pKD46
PCP20
Strain:BW25113
克隆菌株:
Strains:DH5α
JM109
JM110
TOP10
XL2-Blue MRF’
Mach1 T1
OmniMAX2 T1Phage-Resistant Cells
XL10 Gold
EZ10
DH10B
SURE
XL1blue
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